Polypeptide models of Collagen. I. Solution properties of (Gly-Pro-Sar) and (Gly-Sar-Pro)n. V. S. Ananthanaryanan, Samir K. Brahmachari, Rao, S. Rapaka and R. S. Bhatnagar. Biopolymers (1976) 15(4): 707
Polypeptide models of Collagen, II. Solution properties of (Pro-Gly-Phe) n. Samir K.Brahmachari, V.S. Ananthanaryanan, Rao, S. Rapaka and R.S. Bhatnager. Biopolymers (1978) 17(9): 2096
Structural investigations on Poly-4-hydroxy-L-proline I.Theoretical studies. M. Bansal, Samir K. Brahmachari and V. Sasisekharan. Macromolecules (1979) 12: 19
Structural investigations on Poly-4-hydroxy-L-proline. II. Physico-chemical and X-ray studies. Samir K. Brahmachari, M. Bansal, V.S.Ananthanaryanan, V. Sasisekharan. Macromolecules (1978) 12: 23
Conformational criteria for the enzymatic hydroxylation of proline in collagen. Samir K.Brahmachari and V.S.Ananthanaryanan. Curr. Sci.(1978) 47: 107
-turns in nascent procollagen are sites of post translational enzymatic hydroxylation of proline. Samir K. Brahmachari and V.S.Ananthanaryanan. Proc. Natl. Acad, Sci. USA, (1979) 76: 5119
Vacuum Ultraviolet Circular dichroism spectrum of -turn in solution. Samir K. Brahmachari, V.S.Ananthanaryanan, J. Brahms, S. Brahms, Rao, S. Rapaka and R.S. Bhatnagar. Biochem. Biophys. Res. Comm. (1979) 86: 605
-turn conformation of N-acetyl-Pro-Gly-Phe-OH in crystal and solution and its relevance to collagen. V.S.Ananthanaryanan, Samir K. Brahmachari and M. Vijayan. Federation Proc. (1980) 39: 1788
Crystal structure and solution studies on N-acetyle-Pro-Gly- Phe-OH. Samir K. Brahmachari, V.S.Ananthanaryanan, T.N. Bhat, V. Sudhakar, M. Vijayan, Rao, S. Rapaka and R.S. Bhatnagar. J.Amer. Chem. Soc. (1981) 103: 1703
Proline containing -turns in -peptides and proteins. I. Physico-chemical studies on N-acetyl-on N-acetyl- tri- peptides with the Pro-Gly sequence. Samir K. Brahmachari, V.S.Ananthanaryanan, Rao, S. Rapaka and R.S.Bhatnagar. Biopolymers (1982) 21: 1208.
Proline containing -turns in peptides and proteins. II. Analysis of globular protein data. V.S.Ananthanaryanan, Samir K. Brahmachari and N.Pattabiraman. Arch. Biochem. Biophysics (1984) 232: 482
Site and role of the N-terminal fragment of the nucleosomal core histones in their bind to deoxyribonucleic acid as determined by vibrational spectroscopy. M. Couppez, Santiere, Samir K. Brahmachari, J. Brahms, J. Liquier and E. Taillandier. Biochemistry (1980) 19: 3358
B to Z transition in a DNA fibre: The question of handedness of the duplex. V. Sasiskharan and Samir K. Brahmachari. Curr. Sci. (1981) 50: 10
Conformational flexibility of DNA: A theoretical formalism and a few practical applications. V. Sasisekharan, M. Bansal, Samir K. Brahmachari and G. Gupta. Biomolecular sterreodynamics, ed. R.H. Sarma, Adenine Press, N.Y. (1981) 1: 123
Conformation of DNA in chromatin reconstituted from poly(dA-dT) and the core histones. S. Brahms, Samir K. Brahmachari, N. Angelier and J.G. Brahms. Nucleic Acids Res. (1981) 9: 4879
B to Z transition in DNA and its biological implications. Samir K. Brahmachari, Latha P. Kadalayil, K. Majumdar, and V.K. Parnaik. Proceedings of INDO-FRG seminar, BARC, (1983): 106
Critical cation balance in BZ transition; Role of Li+. N. Ramesh and Samir K. Brahmachari. FEBS lett. (1983) 164: 33
Temperature dependent ZB transitions in Poly (dG-dC). Latha P. Kadalayil, K. Majumdar and Samir K. Brahmachari. Curr. Sci, (1983) 52: 907
X-ray diffraction studies on Mycobacterium Smegmatis DNA. M. Rajagopalan, Samir K. Brahmachari, V. Sasisekharan and R. Srivastava. Biopolymers (1983) 22(7): 1633
Structural organization of the meiotic prophase chromatin in the rat testis. Rao B.J., Samir K. Brahmachari and Rao M.R.S. J. Biol. Chem, (1983) 258: 13478
A novel structural transition in poly (dG-Me5dC): ZBZ. Latha P. Kadalayil and Samir K. Brahmachari. FEBS lett. (1985) 182: 315
Left-handed DNA in synthetic and topologically constrained form V DNA and its implications in protein recognition. Shouche, Y.S., Latha P. Kadalayil, Ramesh N., Majumder K., Mandyan V. and Samir K. Brahmachari. Proc. Int symp. Biomol. Struct Interactions, Suppl. J. Biosciences (1985) 8: 563
Poly (dG-dC) in the Z-form inhibits E. Coli DNA polymerase I and AMV DNA polymerase activity. Samir K. Brahmachari, Ramesh N., M.R. Das and Veena K. Parnaik. Biochemistry Int. (1985) 11: 281
B to Z transitions in DNA and their biological implications. Latha P. Kadalayil and Samir K. Brahmachari. J. Scientific & Industrial Res. (1986) 45: 521
Sequence dependence and role of 5'-phosphate in B to Z transition. Majumder K., Samir K. Brahmachari and V. Sasisekharan. FEBS lett. (1986) 198: 240
Use of volatile buffer at ambient temperature: Versatile approach to the purification of self-complementary synthetic deoxyribonucleotides by reverse phase high-performance liquid chromatography. Majumder K., Latha P. Kadalayil and Samir K. Brahmachari. J. Chromatography (1986) 355: 328.
Recognition of B and Z forms of DNA by E. Coli DNA polymerase. Ramesh N., Shouche Y.S. and Samir K. Brahmachari. J. Mol. Biol. (1986) 190: 635
DNA structural variability as a factor in gene expression and evolution. Conrad M., Samir K. Brahmachari and V. Sasisekharan. Biosystems (1986) 19: 123
Sequences that adopt non B-form conformation in form V DNA as probed by enzymatic methylation. Samir K. Brahmachari, Shouche Y.S., Charles R. Cantor and M. McClelland. J. Mol. Biol. (1987) 193: 201
Synthesis and purification of Oligodeoxyribonucleotides: A modified approach. Kumud Majumder, Latha P. Kadalayil and Samir K. Brahmachari. Curr. Sci. (1987) 56: 693
Torsional stress, Unusual DNA structures; and Eukaryotic gene expression. C. R. Cantor, S. Bandopadhaya, Samir K. Brahmachari, C.F. Hui, M. McClelland, R. Morse and C. L. Smith. “Unusual DNA structure”; Ed. R.D. Wells and S.C. Harvey. Springer-Verlag, New York, (1988)
Sequence specificity of Z-DNA formation in Oligonucleotides. Latha P. Kadalayil, Kumud Majumder, R. K. Mishra and Samir K. Brahmachari. Biochemistry Int. (1988) 17: 121
Interruption of (CG)n sequences by GG, TG and CA need not prevent B to Z transition in solution. R.K. Mishra, Latha P. Kadalayil and Samir K. Brahmachari. Nucleic Acids Res. (1988) 16: 4651
Synthesis of novel polynucleotide: Potential R-L model. R.K. Mishra and Samir K. Brahmachari. Curr. Sci. (1988) 57: 574
Dynamic nature of B to Z transition: Role of DNA supercoiling and Z-DNA binding protein. N. Ramesh and Samir K. Brahmachari. Ind. J. Biochem. Biophys. Silver Jubilee issue (1988) 25: 542
Sequence criteria for Z-DNA formation: Studies on poly d(ACGT). Kumud Majumder, Rakesh K. Mishra, Manju Bansal and Samir K. Brahmachari. Nucleic Acids Res. (1989) 17: 450
Sequence specificity in supermine induced structural changes in CG-oligomers. Kumud Majumder and Samir K. Brahmachari. Biochemistry Int., (1989) 18: 455
Structural alteration from non-B to B-form could reflect Dnase I hypersensitivity. N. Ramesh and Samir K. Brahmachari. J. Biomol. Struc. Dynamics (1989) 6: 899
Zintrons in rat alpha-Lactalbumin gene. G. Meera, N. Ramesh and Samir K. Brahmachari. FEBS lett. (1989) 251: 245
Preparation of Megabase DNA from adult insects and mammalian spleen for pulse field gel electrophoresis. Vani Brahmachari, R. Nagasuma and Samir K. Brahmachari. J. Genetics (1989) 68: 185
Unusual DNA structures: Sequence requirements and role in transcriptional control. Samir K. Brahmachari, N. Ramesh, Yogesh S. Souche, Rakesh K. Mishra, Rajesh Bagga and G. Meera. Structures & Methods, Vol 2, Eds. R.H. Sarma & M.H. Sarma. Adenine press (1990)
DNA duplex with a potential to change handedness after every half a turn. Samir K. Brahmachari, Rakesh K. Mishra, Rajesh Bagga and N. Ramesh. Nucleic Acids Res. (1989) 17: 7273
Role of Environment in the Interaction of Nonintercalators with Z-DNA. K. Ekambareswara Rao, N. Ramesh, D. Chaudhary, Samir K. Brahmachari and V. Sasisekharan. Journal of Biomolecular Structure & Dynamics (1989) 7: 335
Probing of unusual DNA structures in topologically constrained form V DNA: Use of restriction enzyme as a structural probe. Shouche Y.S., N. Ramesh and Samir K. Brahmachari. Nucleic Acids Res. (1990) 18: 267
Supercoil induced unusual DNA structures as transcriptional block. Rajesh Bagga, N. Ramesh and Samir K. Brahmachari. Nucleic Acids Res. (1990) 18: 3363-9
Z-DNA Binding Protein Mediated Stabilization of the Z-conformation. Samir K. Brahmachari, Eugenia T. Paulus, N. Krishnamachary and N. Ramesh. In Protein Structure-Function (1990), Ed. Zaidi, Abbasi & Smith, TWEL Publishers, 135
A novel approach to design cis-acting DNA structural elements for regulation of gene expression in vivo. P.S. Sarkar, R. Bagga, P. Balagurumoorthy and Samir K. Brahmachari. Curr. Sci. (1991) 60: 586
Distribution of simple repetitive (TG/CA)n and (CT/AG)n sequences in human and rodent genome. Jalaj Tripathi and Samir K. Brahmachari Journal of Biomolecular Structure & Dynamics (1991) 9:387-97
Synthetic gene design to investigate the role of cis-acting DNA structural elements in regulation of gene expression in vivo. Samir K. Brahmachari, P.S.Sarkar, P.Balagurumoorthy, P.Burma and R.Bagga Nucleic Acids Res., Symp. Series (1991) 24: 163
Hairpin and parallel quartet structures for telomeric sequences. P. Balagurumoorthy, Samir K.Brahmachari, Debasis Mohanty, Manju Bansal and V.Sasisekharan Nucleic Acids Res. (1992) 20: 4061-7
Intramolecular triplex potential sequence within a gene down regulates its expression in vivo. P.S.Sarkar and Samir K. Brahmachari Nucleic Acids Res (1992) 20: 5713-8
Genome Analysis I: A new approach for visualization of sequence organization in genomes. P.K.Burma, Alok Raj, Jayant K.Deb and Samir K. Brahmachari Journal of Biosciences (1992) 17: 395
Polypurine-polypyrimidine sequences adopt unwound structure in pBR322 from V DNA as probed by single-hit analysis of HpaII sites. R.Bagga and Samir K. Brahmachari Journal of Biomolecular Structure & Dynamics (1993) 10: 879
Chaos game representations of similarities and differences between genomic sequences. S.Baranidharan, B.Sankaranarayanan and Samir K. Brahmachari International Journal of Genome Research (1994) 1: 309
Intramolecular DNA triple helix and regulation of gene expression. Samir K. Brahmachari and P.S.Sarkar Structural Biology: State of Art 1993, Vol 2, Eds. R.H.Sarma and M.H.Sarma, Adenine press (1994)
CA/TG sequence at the 5' end of oligo a-tracts strongly modulates DNA curvature. Akhilesh K.Nagaich, D.Bhattacharya, Samir K. Brahmachari and Manju Bansal J.Biol.Chem (1994) 269: 7824
Structure and Stability of Human Telomeric Sequence. P.Balagurumoorthy and Samir K.Brahmachari J.Biol.Chem (1994) 269: 21858-69
Synthetic gene design for modulation of gene expression in vivo. Samir K. Brahmachari, Partha S.Sarkar, P.K.Burma, U.S.Shaligram and S.S.Pataskar Proc. of the Ranbaxy Sym. On Mol. Genetics and Gene therapy (1995): 85-97
Simple repetitive sequences in the genome: structure and functional significance. Samir K.Brahmachari, G.Meera,Partha S.Sarkar, P.Balagurumoorthy, J.Tripathi, S.Raghavan, U.S.Shaligram and S.S.Pataskar Electrophoresis (1995) 16: 1705-1714
Analysis of CAG/CTG triplet repeats in the human genome: Implication in transcription factor gene regulation. Rachna Bhandari and Samir K. Brahmachari J. Biosci. (1995) 20: 613
Intra and interloop interactions in the folded G quartet structure of Oxytricha telomeric sequence. P.Balagurumoorthy and Samir K. Brahmachari Ind.J.Biochem.Biophys. (1995) 32: 385
Polypurine/polypyrimidine sequences as cis acting transcriptional regulators. Samir K. Brahmachari, Partha S.Sarkar, Sowmya Raghavan, Malthy Narayan and Amit K.Maiti Gene (1997) 190: 17
Positional preferences of polupurine/polypyrimidine sequences in the genome of S.cerevisiae:Implications for cis-regulation of gene expression. Sowmya Raghavan, Pradeep K.Burma and Samir K. Brahmachari Journal of Molecular Evolution (1997) 45: 485-498
Human genome studies and intellectual property rights: Whither national interest? T R Sivaramjani and Samir K. Brahmachari Current Science (1997) 72: 708
International Collaboration in genetic research. S. Chatterjee, Samir K. Brahmachari, S Jain, P. Majumder and T Reich. Nature Genetics (1997) 15: 124
Variation at the MJD locus in the major psychoses. Q.Saleem, M.Vijayakumar, M.Mulsuddi, N.Chowdhary, S.Jain and Samir K. Brahmachari Am.J.Med.Genet. (1998) 81(5): 440-442
Correlation of Clinical Profile of Mytonic dystrophy with CTG repeats in Mtotonin Protein kinase gene. M.Gourie-Devi, J.Ray Chaydhari, Anisya Vasanth, Q.Saleem, Mousumi Mutsuddi, Meera Gopinath, P.S.Sarkar and Samir K. Brahmachari Ind.J.Med.Res. (1998) 107: 187-196
Investigating the role of Trinucleotide repeats in schizophrenia and bipolar disorder. Quasar Saleem, Sanjeev Jain and Samir K. Brahmachari In the Proceedings of 5th Annual Symp., Ranbaxy Science Foundation. On Molecular Intervention in Disease (1998), 85-89
Peptide models for inherited neurodegenerative disorders: conformation and aggregation properties of long polyglutamine peptides with and without interruptions Deepak Sharma, Sunita Sharma, Santosh Pasha and Samir K. Brahmachari FEBS. Lett. (1999) 456(1):181-185
The multitude of ‘omics’ and ‘omes’: Evolution of scientific terms in molecular biology in the new millennium. Srinivasn Ramachandran, Debasis Dash, Samir K. Brahmachari Current Science, (1999) 77(7): 846-847
Polypurine/polypyrimidine repeats in complete bacterial genomes: Preference for polypurine repeats in protein-coding regions (1999). Sowmya Raghawan, Ramesh Hariharan and Samir K. Brahmachari Gene (2000) 242: 275-283
Association analysis of CAG repeats at the KCNN3 locus in Indian patients with Bipolar disorder and Schizophrenia. Quasar Saleem, V.S. Sreevidya, J. Sudhir, J. Vijaya Savithri, Y. Gowda, V. Benegal, Chandrika B. Rao, Partha P. Majumder, Anuranjan Anand, Samir K. Brahmachari and Sanjeev Jain Am.J.Med.Genet. (2000) 96, 744-748
Molecular analysis of autosomal dominant hereditary ataxias in the Indian population: High frequency of SCA2 and evidence for a common founder mutation. Quasar Saleem, Shweta Choudhry, Mitali Mukherji, Leena Bashyam, M.V.Padma, Amber Chakravarthy, M.C.Maheshwari, Satish Jain and Samir K. Brahmachari Human Genetics (2000) 106: 179-187
Association analysis of 5HT transporter gene in bipolar disorder in the Indian population. Q. Saleem, S. Ganesh, M. Vijaykumar, Y.C.J.Reddy., Samir K. Brahmachari, Sanjeev Jain Am. J. Med. Genet. (2000) 92(2): 170-172
Probing the polyglutamine puzzle in neurological disorders. Samir K. Brahmachari , Deepak Sharma , Sharma S, Santosh Pasha, Sen S, Quasar Saleem Q FEBS Lett. (2000) 472(1): 167-168
Association of CAG repeat Loci on Chromosome 22 with Schizophrenia and Bipolar Disorder. Quasar saleem, Debasis Dash, Charu Gandhi, Anupam Kishore, Vivek Benegal, Tessi Sherrin, Odity Mukerjee, Sanjeev Jain and Samir K. Brahmachari Mol. Psychiatry (2001) 6(6): 694-700
Progressive Myoclonus Epilepsy [EPM1] repeat d(CCCCGCCCCGCG)n forms folded hairpin structures. Shashank S. Pataskar, Debasis Dash, and Samir K. Brahmachari J. Biol. Chem (2001) 276(25): 19676-19683
Intrinsically unstructured proteins: Functional and structural insights. Debasis Dash and Samir K. Brahmachari. Current Science (2001) 81(5): 579-586
Staggered A-tracts and programmed periodicity in chromatin structure. Akhilesh K. Nagaich and Samir K. Brahmachari. J. Biosci. (2002) 27(5): 529-537
Molecular modeling of expanded polyglutamine stretch and its effect on intramolecular protein aggregation. S. Sen, D. Sharma, Sunita Sharma, Santosh Pasha, Quasar Saleem and Samir K. Brahmachari Biophysics J. (2003) 84(6): 3278-3285
Long-Range structure induction in RNA by CAG repeats: evidence from FTIR and CD spectroscopy and prediction from computer simulation. Subhasis P. Datta, Santosh Pasha, Deepak Sharma, Sunita Sharma, Santosh Pasha, and Samir K. Brahmachari Nucleic Acids Res. (2003) 31(11): 2594-2603
Conformational fluctuations in repeat tracts: Analysis of single-molecule mechanical unfolding studies by force-clamp spectroscopy. A.Caspi, A.S. Bhunia, S.Patel, M.M. Heller, S. Rahav, M. Inger, Samir K. Brahmachari and Y. Shav-Tal Biophysical J. (2003) 84: 4070-4078
Fluorescent sequence-specific recognition of single-stranded DNA with a crown ether-styryl-pyridine conjugate. Jayanth R. Sukumar, B.Debnath, K.Kundu, Samir K. Brahmachari, and Siddhartha Roy Bioconjugate Chem. (2004) 15(2): 246-255
Human genome variation and the concept of the gene: Present state and prospects for future research. Samir K. Brahmachari and Debasis Dash. Trends Genet (2004) 20(10): 544-548
Investigating the myogenic potential of polyglutamine stretch using CAG repeat protein with homopolymeric amino acid stretches. Santosh Pasha, Deepak Sharma, Sunita Sharma, and Samir K. Brahmachari. Biophys. J. (2004) 87(6): 3957-3968
Transcriptional potential of CAG repeat loci is driven by a CAA interruption: implications for the variability in age at onset of polyglutamine disorders. S.Ganesh, Shashank Pataskar, A.K.Maiti, B.Debnath, J.V.S. Succar, S.Roy, S.Mukhopadhyay, and Samir K. Brahmachari. Hum. Mol. Genet (2005) 14(12): 1713-1723
Snatching the double-edged sword: Molecular genetic studies of schizophrenia. S. Ganesh and Samir K. Brahmachari. Brain Research Bulletin (2005) 68(3): 130-135
Induction of helical chirality by tri-Asp L-tetrapeptide. B.Debnath, P.Chakrabarti, D.Ghosh, K.Maiti, Samir K. Brahmachari and S.Roy. Angew. Chem. Int. Ed. Engl (2005) 44(22): 3505-3508
Systems Biology: A concept for Networked and Integrative Biology. Samir K. Brahmachari and Debasis Dash. J. Biosci. (2005) 30(2): 281-282
Central nervous system and behaviour. Sanjeev Jain and Samir K. Brahmachari. The Lancet (2005) 366(9503): 645
Identification and experimental verification of unstable genes in Saccharomyces cerevisiae. Munish Tiwari, Sukumar Sinha and Samir K. Brahmachari. J. Biosci. (2005) 30(6): 715-726
Dynamics of repeat expansion: Insight from incurable neurological disorders. Samir K. Brahmachari and Debasis Dash. J. Biosci. (2005) 30(1): 7-8
Understanding natural selection using prion biology. S. Ganesh and Samir K. Brahmachari. Curr. Sci (2006) 90(3): 283-284
Role of CAG triplet repeat polymorphisms in Neuropsychiatric Disorders. Debasis Dash, Sunita Sharma, Santosh Pasha, Shweta Muthuswami, Jitendra Kumar, Akhilesh Sharma and Samir K. Brahmachari. Current Science (2006) 90(4): 427-436
Prion Biology: The role of RNA editing and gene structure in evolution. Samir K. Brahmachari. Nature Reviews Genetics (2006) 7(5): 370-380
Analysis of vertebrate pre-mRNA 3’end processing signals. Lakhyajit Dey, Suman Dey, Harpreet Singh, and Samir K. Brahmachari. Nucl. Acids Res. (2006) 34(10): 3023-3031
Single Molecule Force Spectroscopy Unfolds the Role of Sp1 in Transcriptional Activation by CAG/CTG Repeat. Santosh Pasha, Bhaskar C. Roy, Debasis Dash, Vinita Gowda and Samir K. Brahmachari. J. Biol. Chem. (2006) 281: 3846-3854
Deciphering Disorders Involving Repeat Expansion: From Genotype to Molecular Phenotype (2006). S. Ganesh, D.Dash, and Samir K. Brahmachari. Indian Academy of Science (2006) 31: 445-455
Molecular Interactions of the Coiled-Coil Domain of M-phase Phosphoprotein 6 with SANT and LXXLL Motifs: Identification of Pleiotropic Antagonists of Estrogen Receptor α. T. Jeyaraman, Bhaskar Roy, Santosh Pasha, Shweta Muthuswami, Vinita Gowda and Samir K. Brahmachari. J. Biol. Chem. (2006) 281: 24059-24072
Human P53 transactivation domain suppresses the Polyglutamine aggregation. R. J. Sudhakar, D. Sharma, S. Ganesh, S. K. Brahmachari. Biochem. Biophys. Res. Commun. (2008) 365: 764-770
Role of Prion Protein in Synapse Dynamics: Implications in Transmissible and Non-transmissible Neurodegenerative Disorders. Samir K. Brahmachari and Srinivasan Ramachandran. J. Biosci. (2008) 33(4): 529-540
Decoding an Omics approach to evolution of Genetic Systems: global regulation and evolution of the Yeast Transcription machinery. Samir K. Brahmachari, Vinita Gowda and Debasis Dash. In Evolutionary Systems Biology 2009 Springer-Verlag Berlin Heidelberg: 191-216
Potential G quadruplex motifs in P. falciparum genome. S. Shankar, D. Dash, and Samir K. Brahmachari. Bioinformatics (2009) 6(4): 242-250
Modelling and Structural Studies of Sequence-specific RecA-DNA interactions. Munish Tiwari and Samir K. Brahmachari. J. Mol. Biol. (2009) 376(2): 567-580
Finding Convergence in the Testing of Drugs, Chemical Genomics and Rational Drug Design. Samir K. Brahmachari, Vinita Gowda and Debasis Dash. In Drug Development: Molecular Targets for GI Diseases. (2010) 267-281
Characterization of Non Coding RNAs in L. major. T. Jeyaraman, Debasis Dash, Santosh Pasha and Samir K. Brahmachari. 2010. Int. J. Parasitol. (2010) 40(8): 841-854
The Puzzle of Cis-trans non-coding RNAs in Trypanosomatids. T. Jeyaraman, Santosh Pasha and Samir K. Brahmachari. 2011. Trends in Molecular Medicine (2011) 17(2): 97-102
Translational Cancer Genomics: Genomics and Clinical Evidence for Systematic Understanding of Cancer. (2011). Samir K. Brahmachari, Santosh Pasha and Debasis Dash. In Systems Biology of Cancer. Springer New York: 177-195
Chromosomal Polymorphisms in Sperm DNA: Implications for Male Infertility and Fetal Wastage. (2012). Samir K. Brahmachari, Vinita Gowda and Debasis Dash. In Genetic Disorders and the Fetus: Diagnosis, Prevention and Treatment. 7th ed. Wiley-Blackwell: 227-238
Noncoding RNAs and Chromatin Organization. Santosh Pasha, Munish Tiwari and Samir K. Brahmachari. Chromosome Research (2013) 21(6-7): 625-638
Analysing mRNA-Cis-Element interactions in Unstable Transcripts. Munish Tiwari, Debasis Dash and Samir K. Brahmachari. J. Mol. Biol. (2014) 426(5): 1128-1145
Noncoding RNAs and their dynamics in the Molecular Epidemiology of Infectious Diseases. Santosh Pasha, Vinita Gowda, R. J. Sudhakar, Debasis Dash and Samir K. Brahmachari. Trends in Molecular Medicine (2014) 20(9): 460-472
Advances in molecular epidemiology of Tuberculosis. Santosh Pasha, Vinita Gowda, R. J. Sudhakar and Samir K. Brahmachari. Trends in Molecular Medicine (2015) 20(9): 568-576
Polymorphisms in Chlamydia infection: Implications for Pathogen detection and vaccination. Santosh Pasha, Vinita Gowda, Debasis Dash and Samir K. Brahmachari. Trends in Molecular Medicine (2016) 20(11): 653-665
Development of a microfluidic device for single-cell analysis. (2017). Santosh Pasha, Vinita Gowda, Debasis Dash, and Samir K. Brahmachari. In Microfluidics for Biologists. Springer New York: 317-329
Emergence of Complex Diseases: Role of Non-coding RNAs in Evolution. (2017). Samir K. Brahmachari, Santosh Pasha, Vinita Gowda and Debasis Dash. Trends in Molecular Medicine (2017) 22(3): 204-215
Targets for human encoded microRNAs in HIV genes. Manoj Hariharan, Vinod Scaria, Beena Pillai, Samir K. Brahmachari. Biochem Biophys Res Commun. (2005) 337(4):1214-1218
Host-virus interaction: a new role for microRNAs. Scaria V, Hariharan M, Maiti S, Pillai B, Brahmachari SK. Retrovirology (2006) 3(1):68
microRNA: an Emerging Therapeutic. Scaria V, Hariharan M, Brahmachari SK, Maiti S, Pillai B. ChemMedChem. (2007) 2(6):789-792
Host-virus genome interactions: macro roles for microRNAs. Vinod Scaria, Manoj Hariharan, Beena Pillai, Souvik Maiti and Samir K. Brahmachari. Cell Microbiol. (2007) 9(12):2784-94
Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication. Ahluwalia JK, Khan SZ, Soni K, Rawat P, Gupta A, Hariharan M, Scaria V, Lalwani M, Pillai B, Mitra D, Brahmachari SK. Retrovirology (2008) 5(1):117
dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation. Hariharan M, Scaria V, and Samir K Brahmachari. BMC Bioinformatics (2009) 10:108
Posttranscriptional regulation of interleukin-10 expression by hsa-miR-106a. Sharma A, Kumar M, Aich J, Hariharan M, Brahmachari SK, Agrawal A, Ghosh B. Proc Natl Acad Sci U S A. (2009) 106(14):5761-6
Human miRNAs: an antiviral defense mechanism. Soni, K; Ahluwalia, JK; Khan, SZ; Pillai, B; Mitra, D; and Samir K Brahmachari. Retrovirology (2009) 6(2): 83
A simple method for incorporating dynamic effects of intronic miRNA mediated regulation. Gokhale S, Hariharan M, Brahmachari SK, Gadgil C. Mol Biosyst. (2012), (8):2145-52
Intronic non-coding RNAs within ribosomal protein coding genes can regulate biogenesis of yeast ribosome. Akshara Pande, Rani Sharma, Bharat Ravi Iyengar, Vinod Scaria, Beena Pillai, Samir K Brahmachari. biRxiv (2018) doi: https://doi.org/10.1101/289751
2-adrenergic receptor polymorphisms and response to salbutamol among Indian asthmatics. Ritushree Kukreti, Pallav Bhatnagar, Chandrika B-Rao, Simone Gupta, Babita Madan, Chinmoyee Das, Randeep Guleria, Amita Umesh Athavale, Samir Kumar Brahmachari & Balaram Ghosh. Pharmacogenomics (2005) 6(4): 399-410.
Pharmacogenomics: a path to predictive medicine for schizophrenia. Simone Gupta, Sanjeev Jain, Samir K Brahmachari & Ritushree Kukreti. Pharmacogenomics (2006) 7(1):31-47
Whole genome expression and biochemical correlates of extreme constitutional types defined in Ayurveda. Prasher B, Negi S, Aggarwal S, Mandal AK, Sethi TP, Deshmukh SR, Purohit SG, Sengupta S, Khanna S, Mohammad F, Garg G, Brahmachari SK; Indian Genome Variation Consortium, Mukerji M. J Transl Med. (2008) 6: 48
Genetic susceptibility to schizophrenia: role of dopaminergic pathway gene polymorphisms. Gupta, M; Chauhan, C; Bhatnagar, P; Gupta, S; Grover, S; Singh, PK; Purushottam, M; Mukherjee, O; Jain, S; Samir K Brahmachari; Kukreti, R. Pharmacogenomics (2009) 10(2): 277-291
Association studies of catechol-O-methyltransferase (COMT) gene with schizophrenia and response to antipsychotic treatment. Gupta M, Bhatnagar P, Grover S, Kaur H, Baghel R, Bhasin Y, Chauhan C, Verma B, Manduva V, Mukherjee O, Purushottam M, Sharma A, Jain S, Brahmachari SK, Kukreti. Pharmacogenomics (2009) 10(3):385-97
Genetic profile of patients with epilepsy on first-line antiepileptic drugs and potential directions for personalized treatment. Sandeep Grover, Mandaville Gourie-Devi, Ruchi Baghel, Sangeeta Sharma, Kiran Bala, Meena Gupta, Krishnamoorthy Narayanasamy, Binuja Varma, Meenal Gupta, Kavita Kaur, Puneet Talwar, Harpreet Kaur, Sudheer Giddaluru, Abhay Sharma, Samir K Brahmachari, Indian Genome Variation Consortium & Ritushree Kukreti. Pharmacogenomics (2010) 11 (7): 927-941
Systems medicine and integrated care to combat chronic noncommunicable diseases. Bousquet J, Anto JM, Sterk PJ, Adcock IM, Chung KF, Roca J, Agusti A, Brightling C, Cambon-Thomsen A, Cesario A, Abdelhak S, Antonarakis SE, Avignon A, Ballabio A, Baraldi E, Baranov A, Bieber T, Bockaert J, Brahmachari S, Brambilla C, Bringer J, Dauzat M, Ernberg I, Fabbri L, Froguel P, Galas D, Gojobori T, Hunter P, Jorgensen C, Kauffmann F, Kourilsky P, Kowalski ML, Lancet D, Pen CL, Mallet J, Mayosi B, Mercier J, Metspalu A, Nadeau JH, Ninot G, Noble D, Oztürk M, Palkonen S, Préfaut C, Rabe K, Renard E, Roberts RG, Samolinski B, Schünemann HJ, Simon HU, Soares MB, Superti-Furga G, Tegner J, Verjovski-Almeida S, Wellstead P, Wolkenhauer O, Wouters E, Balling R, Brookes AJ, Charron D, Pison C, Chen Z, Hood L, Auffray C. Genome Med. (2011) 6;3(7):43
Introducing the Medical bioinformatics in Journal of Translational Medicine. Brahmachari SK. J Transl Med. (2012); 10(1):202
Integrating Health Care Delivery and Data Collection in Rural India Using a Rapidly Deployable, eHealth Center. Agrawal A, Bhattacharya J, Baranwal N, Bhatla S, Dube S, Sardana V, Gaur D R, Balazova D, Brahmachari SK. PLoS Med., (2013) 10(6): e1001468
Genetic epidemiology of pharmacogenetic variations in CYP2C9, CYP4F2 and VKORC1 genes associated with warfarin dosage in the Indian population. Giri AK, Khan NM, Grover S, Kaur I, Basu A, Tandon N, Scaria V, Consortium I, Kukreti R, Brahmachari SK, Bharadwaj D. Pharmacogenomics. 2014 Jul;15(10):1337-54. doi: 10.2217/pgs.14.88.
An Indian effort towards affordable drugs: "generic to designer drugs". Taneja B, Yadav J, Chakraborty TK, Brahmachari SK. Biotechnol J. (2009) 4(3):348-360
Collaborative tools to accelerate neglected disease research: Open Source Drug Discovery model. Bhardwaj A, Scaria V, Thomas Z, Adayikkoth S, Open Source Drug Discovery (OSDD) Consortium, and Samir K. Brahmachari. Collaborative Computational Technologies for Biomedical Research (2011): 321-334, Eds. Sean Ekins, Maggie A. Z. Hupcey, Anthony Williams, John Wiley & Sons.
Towards new business models for R&D for novel antibiotics. So AD, Gupta N, Brahmachari SK, Chopra I, Munos B, Nathan C, Outterson K, Paccaud JP, Payne DJ, Peeling RW, Spigelman M, Weigelt J. Drug Resist Updat. (2011) 14(2):88-94
Open source drug discovery- A new paradigm of collaborative research in tuberculosis drug development. Bhardwaj A, Scaria V, Raghava GP, Lynn AM, Chandra N, Banerjee S, Raghunandanan MV, Pandey V, Taneja B, Yadav J, Dash D, Bhattacharya J, Misra A, Kumar A, Ramachandran S, Thomas Z, Brahmachari SK. Tuberculosis (Edinb). (2011) 91(5): 479-486.
Crowd Sourcing a new paradigm for Interactome Driven Drug Target Identification in Mycobacterium tuberculosis. Vashisht R, Mondal AK, Jain A, Shah A, Vishnoi P, Priyadarshini P, Bhattacharyya K, Rohira, H, Bhat H, Passi A, Mukherjee K, Sonal K, Kumar V, Arora A, Munusamy P, Subramanian A, Venkatachalam A, Gayathri S, Raj S, Chitra V, Verma K, Zaheer S, Balganesh J, Gurusamy M, Mohammed Razeeth, Ilamathi Raja, Thandapani M, Mevada V, Soni R, Rana S, Girish MR, Raghavan S, Sunil N, Kholia T, Patel R, Bhavnani V, Chiranjeevi L, Sengupta S, Singh PK, Atray N, Gandhi S, Avasthi S, Nisthar S, Anurag M, Sharma P, Hasija Y, Dash D, Sharma A, Scaria V, Thomas Z, OSDD Consortium, Chandra N, Brahmachari SK and Bhardwaj A. PLoS One. 2012;7(7):e39808. doi: 10.1371/journal.pone.0039808.
Software Platform for Metabolic Network Reconstruction of Mycobacterium tuberculosis. Ghosh S, Matsuoka Y, Asai Y, Kitano H, Bhardwaj A, Scaria V, Vashisht R, Shah A, Mondal AK, Vishnoi P, Sonal K, Jain A, Priyadarshini P, Bhattacharyya K, Kumar V, Passi A, Sharma P, Brahmachari SK. Systems Biology of Tuberculosis (2013), pp 21-35, Eds: Johnjoe McFadden, Dany J.V. Beste, Andrzej M. Kierzek, Springer
Social networks to biological networks: systems biology of Mycobacterium tuberculosis. Vashisht R, Bhardwaj A, OSDD Consortium, Brahmachari SK. Mol Biosyst, (2013), 9 (7): 1584 – 1593
Systems level mapping of metabolic complexity in Mycobacterium tuberculosis to identify high-value drug targets. Rohit Vashisht, Ashwini G Bhat, Shreeram Kushwaha, Anshu Bhardwaj, OSDD Consortium, Samir K Brahmachari. J Transl Med. 2014; 12(1): 263. doi: 10.1186/s12967-014-0263-5 PMCID: PMC4201925
Metformin as a potential combination therapy with existing front-line antibiotics for Tuberculosis. Rohit Vashisht and Samir K Brahmachari. J Transl Med. 2015; 13:83 doi: 10.1186/s12967-015-0443-y
Designing non-toxic ligands against TB using data intensive genome level analysis. D. Kaur, S. K. Brahmachari. J. Biol. Struct. Dyn., 2015, 33(1), 128
Prioritization of anticancer drugs against a cancer using genomic features of cancer cells: A step towards personalized medicine. Sudheer Gupta, Kumardeep Chaudhary, Rahul Kumar, Ankur Gautam, Jagpreet Singh Nanda, Sandeep Dhanda, Samir Brahmachari, and Gajendra Raghava. Nature Scientific Reports; 6, Article number: 23857 (2016) doi:10.1038/srep23857
Data Intensive Genome Level Analysis for Designing Non-Toxic Ligands against Drug Resistant Mycobacterium tuberculosis. Divneet Kaur, Rohit Vashisht, Rintu Kutum, Debashish Dash, & Samir K. Brahmachari. Sci Rep. (2017) 20:7:46595. doi: 10.1038/srep46595; PMID: 28425478.
Structure based drug discovery for designing leads for the non-toxic metabolic targets in multi drug resistant Mycobacterium tuberculosis. Divneet Kaur, Shalu Mathew, Chinchu G S Nair, Azitha Begum, Ashwin K Jainanarayan, Mukta Sharma, Samir K Brahmachari. J Transl Med. (2017);15(1):261. doi: 10.1186/s12967-017-1363-9. PMID: 29268770
A web-based resource for designing therapeutics against Ebola Virus. Sandeep Kumar Dhanda, Kumardeep Chaudhary, Sudheer Gupta, Samir Kumar Brahmachari and Gajendra P. S. Raghava. Sci Rep. (2016) 6:24782 doi: 10.1038/srep24782
A decade of OSDD for TB: role and outcomes. Nisha Chandran and Samir K. Brahmachari. Current Science (2018), 115, doi: 10.18520/cs/v115/i10/1858-1864
Affordable healthcare threatened! Concern for all stakeholders. Nisha Chandran and Samir K Brahmachari. Current Science; 25 October 2015, 109 (08)
Technology, knowledge and markets: connecting the dots; electric rickshaw in India as a case study. Nisha Chandran and Samir Kumar Brahmachari. Journal of Frugal Innovation (2015), 1:3
Economic Impact of Technology Interventions: Streptokinase Delivering Affordable healthcare: Clot-buster Drugs. Manisha G. Singh, Nisha Chandran, Zakir Thomas, Dipankar Basu, Samir K. Brahmachari. Economic and Political Weekly 2016
Thrombolytic Treatment for Myocardial Infarction; Affordability and Drug Market Segmentation. Nisha Chandran, Manisha G Singh, Zakir Thomas, Dipankar Basu, Samir K Brahmachari. Economic and Political Weekly (2016) Vol. 51, Issue No. 38
Finding Achilles heel of drug resistance in Mycobacterium tuberculosis. N Chandran, M Sharma, AK Jainarayanan, SK Brahmachari. Current Science 2018 (114) (12)
Policy as a driver of economic growth: historical evidence from the Indian pharmaceutical industry. Nisha Chandran and Samir K. Brahmachari. Current Science, (2019) 114, Issue 06 1181-1193, doi: 10.18520/cs/v114/i06/1181-1193.
Health technology as commons: trustable, affordable, adaptable. Clément Le Couedic, Jon Isaac Schull, Shikshya Gautam, Patrick Jandard, Emmanuel Kellner, Afroditi Anastasaki, Katerina Serada, Samir K Brahmachari, Lukas Winter, Pierre Lonchampt, Félix Schoeller, Anirudh Krishnakumar, Bastian Greshake, Kevin Lhoste, Christophe Parot, Guillaume Jeanmaire. Conference: Geneva Health Forum (2020/2021) DOI:10.5281/zenodo.4437560
COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight. Auffray C, Balling R, Blomberg N, Bonaldo MC, Boutron B, Brahmachari S, Bréchot C, Cesario A, Chen S, Clément K, Danilenko D, Di Meglio A, Gelemanović A, Goble C, Gojobori T, Goldman JD, Goldman M, Guo Y, Heath J, Hood L, ... Wouters E. Preprint from F1000Res, (2020), https://doi.org/10.12688/f1000research.26098.1
CSIR@105 Not Out. Samir Brahmachari (2022). Science Reporter: 28-30
The P4 Health Spectrum - A Predictive, Preventive, Personalized and Participatory Continuum for Promoting Healthspan. Michael Sagner, Amy McNeil, Pekka Puska, Charles Auffray, Nathan D Price, Leroy Hood, Carl J Lavie, Ze-Guang Han, Zhu Chen, Samir Kumar Brahmachari, Bruce S McEwen, Marcelo B Soares, Rudi Balling, Elissa Epel, Ross Arena. Prog Cardiovasc Dis. (2016); 59(5):506-521. doi: 10.1016/j.pcad.2016.08.002.
Sequencing of Naturally Aborted Human Foetuses: A Resource for New Knowledge. Brahmachari, S.K. In: Bhattacharya, N., Stubblefield, P. (eds) Human Fetal Growth and Development (2016) Springer, Cham. https://doi.org/10.1007/978-3-319-14874-8_47
Traditional Knowledge-based Medicine: A Review of History, Principles, and Relevance in the Present Context of P4 Systems Medicine. Lemonnier, Nathanaël; Zhou, Guang-Biao; Prasher, Bhavana; Mukerji, Mitali; Chen, Zhu; Brahmachari, Samir K.; Noble, Denis; Auffray, Charles; Sagner, Michael. Progress in Preventive Medicine (2017) 2(7):p e0011, | DOI: 10.1097/
iNICU - Integrated Neonatal Care Unit: Capturing Neonatal Journey in an Intelligent Data Way. Harpreet Singh, Gautam Yadav, Raghuram Mallaiah, Preetha Joshi, Vinay Joshi, Ravneet Kaur, Suneyna Bansal, Samir K Brahmachari. J Med Syst. (2017) 41(8):132. doi: 10.1007/s10916-017-0774-8. Epub 2017 Jul 26.
iCHRCloud: Web & Mobile based Child Health Imprints for Smart Healthcare. Harpreet Singh, Raghuram Mallaiah, Gautam Yadav, Nitin Verma, Ashu Sawhney, Samir K Brahmachari. J Med.Syst. 42; (2017), doi: 10.1007/s10916-017-0866-5.
Viva Europa, a Land of Excellence in Research and Innovation for Health and Wellbeing. Auffray, Charles; Sagner, Michael; … Brahmachari, Samir; … Nobrega, Francisco. Progress in Preventive Medicine (2017) 2(3):p e006, June 2017. | DOI: 10.1097/pp9.000000000
Big Data Analysis of Traditional Knowledge-based Ayurveda Medicine. Singh Harpreet, Bhargava Sapna, Ganeshan Sailesh, Kaur Ravneet, Sethi Tavpritesh, Sharma Mukesh Chauhan Madhusudan, Chauhan Neerja, Chauhan Rishipal, Chauhan Partap, Brahmachari Samir K. Progress in Preventive Medicine (2018). DOI: 10.109
Intronic miRNA mediated gene expression regulation controls protein crowding inside the cell. Prashant Sinha, Pragya Jaiswal, Ashwin K Jainarayanan, Samir K Brahmachari. Gene (2018):679:172-178. doi: 10.1016/j.gene.2018.08.082. Epub 2018 Sep 4.
Paradigm for disease deconvolution in rare neurodegenerative disorders in Indian population: insights from studies in cerebellar ataxias. Renu Kumari, Deepak Kumar, Samir K Brahmachari, Achal K Srivastava, Mohammed Faruq, Mitali Mukerji. J Genet. (2018); 97(3):589-609. PMID: 30027898
Invariant Genes in Human Genomes. Ankit Kumar Pathak, Ashwin Kumar Jainarayanan, Samir Kumar Brahmachari. bioRxiv preprint (2019) doi: https://doi.org/10.1101/739706
Meta-analysis of genomic variants and gene expression data in schizophrenia suggests the potential need for adjunctive therapeutic interventions for neuropsychiatric disorders. S Anirudh Chellappa, Ankit Kumar Pathak, Prashant Sinha, Ashwin K Jainarayanan, Sanjeev Jain, Samir K Brahmachari. J Genet, (2019), 98(2):60.
Genomics of rare genetic diseases-experiences from India. The Gaurdian Consortium (280 authors) Anjali Bajaj … Samir K. Brahmachari, Vinod Scaria, Sridhar Sivasubbu. Human Genomics, (2019), 13: 52
Parkinson's disease and schizophrenia interactomes contain temporally distinct gene clusters underlying comorbid mechanisms and unique disease processes. Kalyani B Karunakaran, Sanjeev Jain, Samir K Brahmachari, N Balakrishnan, Madhavi K Ganapathiraju. Schizophrenia (Heidelb); (2024); 10(1):26. doi: 10.1038/s41537-024-00439-3.
Drug Contraindications in Comorbid Diseases: a Protein Interactome Perspective. Kalyani B. Karunakaran, Madhavi K. Ganapathiraju, Sanjeev Jain, Samir K. Brahmachari, N. Balakrishnan. Netw Model Anal Health Inform Bioinforma 13, 10 (2024). https://doi.org/10.1007/s13721-023-00440-3.